Design of a data model for developing laboratory information management and analysis systems for protein production
Identifieur interne : 000255 ( France/Analysis ); précédent : 000254; suivant : 000256Design of a data model for developing laboratory information management and analysis systems for protein production
Auteurs : Anne Pajon [Royaume-Uni] ; John Ionides [Royaume-Uni] ; Jon Diprose [Royaume-Uni] ; Joël Fillon [Royaume-Uni] ; Rasmus Fogh [Royaume-Uni] ; Alun W. Ashton [Royaume-Uni] ; Helen Berman [États-Unis] ; Wayne Boucher [Royaume-Uni] ; Miroslaw Cygler [Canada] ; Emeline Deleury [France] ; Robert Esnouf [Royaume-Uni] ; Joël Janin [France] ; Rosalind Kim [États-Unis] ; Isabelle Krimm [France] ; Catherine L. Lawson [États-Unis] ; Eric Oeuillet [France] ; Anne Poupon [France] ; Stéphane Raymond [Canada] ; Tim Stevens [Royaume-Uni] ; Herman Van Tilbeurgh [France] ; John Westbrook [États-Unis] ; Peter Wood [Royaume-Uni] ; Eldon Ulrich [États-Unis] ; Wim Vranken [Royaume-Uni] ; Li Xueli [Canada] ; Ernest Laue [Royaume-Uni] ; David I. Stuart [Royaume-Uni] ; Kim Henrick [Royaume-Uni]Source :
- Proteins: Structure, Function, and Bioinformatics [ 0887-3585 ] ; 2005-02-01.
English descriptors
- KwdEn :
Abstract
Data management has emerged as one of the central issues in the high‐throughput processes of taking a protein target sequence through to a protein sample. To simplify this task, and following extensive consultation with the international structural genomics community, we describe here a model of the data related to protein production. The model is suitable for both large and small facilities for use in tracking samples, experiments, and results through the many procedures involved. The model is described in Unified Modeling Language (UML). In addition, we present relational database schemas derived from the UML. These relational schemas are already in use in a number of data management projects. Proteins 2005. © 2004 Wiley‐Liss, Inc.
Url:
DOI: 10.1002/prot.20303
Affiliations:
- Canada, France, Royaume-Uni, États-Unis
- Angleterre, Angleterre de l'Est, Auvergne-Rhône-Alpes, Californie, New Jersey, Oxfordshire, Rhône-Alpes, Wisconsin
- Cambridge, Lyon, Oxford
- Université de Cambridge
Links toward previous steps (curation, corpus...)
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- to stream Istex, to step Curation: 002604
- to stream Istex, to step Checkpoint: 000C93
- to stream Main, to step Merge: 002D97
- to stream Main, to step Curation: 002A65
- to stream Main, to step Exploration: 002A65
- to stream France, to step Extraction: 000255
Links to Exploration step
ISTEX:8D6E95898AA8051A750541550C87E2FC0D3E47E7Le document en format XML
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Stuart</name><affiliation wicri:level="3"><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Oxford Protein Production Facility, Wellcome Trust Centre for Human Genetics, Headington, Oxford</wicri:regionArea><placeName><settlement type="city">Oxford</settlement><region type="country">Angleterre</region><region type="comté" nuts="2">Oxfordshire</region></placeName></affiliation></author><author><name sortKey="Henrick, Kim" sort="Henrick, Kim" uniqKey="Henrick K" first="Kim" last="Henrick">Kim Henrick</name><affiliation wicri:level="1"><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge</wicri:regionArea><wicri:noRegion>Cambridge</wicri:noRegion></affiliation><affiliation wicri:level="1"><country xml:lang="fr" wicri:curation="lc">Royaume-Uni</country><wicri:regionArea>Macromolecular Structures Database, EMBL‐EBI, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD</wicri:regionArea><wicri:noRegion>Cambridge CB10 1SD</wicri:noRegion></affiliation></author></analytic><monogr></monogr><series><title level="j">Proteins: Structure, Function, and Bioinformatics</title><title level="j" type="abbrev">Proteins</title><idno type="ISSN">0887-3585</idno><idno type="eISSN">1097-0134</idno><imprint><publisher>Wiley Subscription Services, Inc., A Wiley Company</publisher><pubPlace>Hoboken</pubPlace><date type="published" when="2005-02-01">2005-02-01</date><biblScope unit="volume">58</biblScope><biblScope unit="issue">2</biblScope><biblScope unit="page" from="278">278</biblScope><biblScope unit="page" to="284">284</biblScope></imprint><idno type="ISSN">0887-3585</idno></series><idno type="istex">8D6E95898AA8051A750541550C87E2FC0D3E47E7</idno><idno type="DOI">10.1002/prot.20303</idno><idno type="ArticleID">PROT20303</idno></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">0887-3585</idno></seriesStmt></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>LIMS</term><term>UML data model</term><term>database schema</term><term>protein production</term></keywords></textClass><langUsage><language ident="en">en</language></langUsage></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Data management has emerged as one of the central issues in the high‐throughput processes of taking a protein target sequence through to a protein sample. To simplify this task, and following extensive consultation with the international structural genomics community, we describe here a model of the data related to protein production. The model is suitable for both large and small facilities for use in tracking samples, experiments, and results through the many procedures involved. The model is described in Unified Modeling Language (UML). In addition, we present relational database schemas derived from the UML. These relational schemas are already in use in a number of data management projects. Proteins 2005. © 2004 Wiley‐Liss, Inc.</div></front></TEI><affiliations><list><country><li>Canada</li><li>France</li><li>Royaume-Uni</li><li>États-Unis</li></country><region><li>Angleterre</li><li>Angleterre de l'Est</li><li>Auvergne-Rhône-Alpes</li><li>Californie</li><li>New Jersey</li><li>Oxfordshire</li><li>Rhône-Alpes</li><li>Wisconsin</li></region><settlement><li>Cambridge</li><li>Lyon</li><li>Oxford</li></settlement><orgName><li>Université de Cambridge</li></orgName></list><tree><country name="Royaume-Uni"><noRegion><name sortKey="Pajon, Anne" sort="Pajon, Anne" uniqKey="Pajon A" first="Anne" last="Pajon">Anne Pajon</name></noRegion><name sortKey="Ashton, Alun W" sort="Ashton, Alun W" uniqKey="Ashton A" first="Alun W." last="Ashton">Alun W. Ashton</name><name sortKey="Boucher, Wayne" sort="Boucher, Wayne" uniqKey="Boucher W" first="Wayne" last="Boucher">Wayne Boucher</name><name sortKey="Diprose, Jon" sort="Diprose, Jon" uniqKey="Diprose J" first="Jon" last="Diprose">Jon Diprose</name><name sortKey="Esnouf, Robert" sort="Esnouf, Robert" uniqKey="Esnouf R" first="Robert" last="Esnouf">Robert Esnouf</name><name sortKey="Fillon, Joel" sort="Fillon, Joel" uniqKey="Fillon J" first="Joël" last="Fillon">Joël Fillon</name><name sortKey="Fogh, Rasmus" sort="Fogh, Rasmus" uniqKey="Fogh R" first="Rasmus" last="Fogh">Rasmus Fogh</name><name sortKey="Henrick, Kim" sort="Henrick, Kim" uniqKey="Henrick K" first="Kim" last="Henrick">Kim Henrick</name><name sortKey="Henrick, Kim" sort="Henrick, Kim" uniqKey="Henrick K" first="Kim" last="Henrick">Kim Henrick</name><name sortKey="Ionides, John" sort="Ionides, John" uniqKey="Ionides J" first="John" last="Ionides">John Ionides</name><name sortKey="Laue, Ernest" sort="Laue, Ernest" uniqKey="Laue E" first="Ernest" last="Laue">Ernest Laue</name><name sortKey="Stevens, Tim" sort="Stevens, Tim" uniqKey="Stevens T" first="Tim" last="Stevens">Tim Stevens</name><name sortKey="Stuart, David I" sort="Stuart, David I" uniqKey="Stuart D" first="David I." last="Stuart">David I. Stuart</name><name sortKey="Vranken, Wim" sort="Vranken, Wim" uniqKey="Vranken W" first="Wim" last="Vranken">Wim Vranken</name><name sortKey="Wood, Peter" sort="Wood, Peter" uniqKey="Wood P" first="Peter" last="Wood">Peter Wood</name></country><country name="États-Unis"><region name="New Jersey"><name sortKey="Berman, Helen" sort="Berman, Helen" uniqKey="Berman H" first="Helen" last="Berman">Helen Berman</name></region><name sortKey="Kim, Rosalind" sort="Kim, Rosalind" uniqKey="Kim R" first="Rosalind" last="Kim">Rosalind Kim</name><name sortKey="Lawson, Catherine L" sort="Lawson, Catherine L" uniqKey="Lawson C" first="Catherine L." last="Lawson">Catherine L. Lawson</name><name sortKey="Ulrich, Eldon" sort="Ulrich, Eldon" uniqKey="Ulrich E" first="Eldon" last="Ulrich">Eldon Ulrich</name><name sortKey="Westbrook, John" sort="Westbrook, John" uniqKey="Westbrook J" first="John" last="Westbrook">John Westbrook</name></country><country name="Canada"><noRegion><name sortKey="Cygler, Miroslaw" sort="Cygler, Miroslaw" uniqKey="Cygler M" first="Miroslaw" last="Cygler">Miroslaw Cygler</name></noRegion><name sortKey="Raymond, Stephane" sort="Raymond, Stephane" uniqKey="Raymond S" first="Stéphane" last="Raymond">Stéphane Raymond</name><name sortKey="Xueli, Li" sort="Xueli, Li" uniqKey="Xueli L" first="Li" last="Xueli">Li Xueli</name></country><country name="France"><noRegion><name sortKey="Deleury, Emeline" sort="Deleury, Emeline" uniqKey="Deleury E" first="Emeline" last="Deleury">Emeline Deleury</name></noRegion><name sortKey="Janin, Joel" sort="Janin, Joel" uniqKey="Janin J" first="Joël" last="Janin">Joël Janin</name><name sortKey="Krimm, Isabelle" sort="Krimm, Isabelle" uniqKey="Krimm I" first="Isabelle" last="Krimm">Isabelle Krimm</name><name sortKey="Oeuillet, Eric" sort="Oeuillet, Eric" uniqKey="Oeuillet E" first="Eric" last="Oeuillet">Eric Oeuillet</name><name sortKey="Poupon, Anne" sort="Poupon, Anne" uniqKey="Poupon A" first="Anne" last="Poupon">Anne Poupon</name><name sortKey="Van Tilbeurgh, Herman" sort="Van Tilbeurgh, Herman" uniqKey="Van Tilbeurgh H" first="Herman" last="Van Tilbeurgh">Herman Van Tilbeurgh</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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